PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00097g01810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 686aa    MW: 76474.9 Da    PI: 5.2567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00097g01810.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06111132426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               ++C ff++ G C  Gd+C F+H 
  Peaxi162Scf00097g01810.1 111 VPCIFFQQ-GLCLKGDKCAFMHA 132
                               79******.*************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7931746IPR000571Zinc finger, CCCH-type
PfamPF156631.4E-111872No hitNo description
SMARTSM003560.00231845IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2354874IPR000571Zinc finger, CCCH-type
SMARTSM003560.125073IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535107134IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4108133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6109132IPR000571Zinc finger, CCCH-type
PfamPF146080.0051112131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MVGPTQPPPP SAEEEALKRN TDCVYFLASP LTCKKGSECE YRHSDMARLN PRDCWYWLNG  60
NCLNPKCAFR HPPLDGLLEA QTPTVMGSSV APVMSAASMP QVPYASSKQG VPCIFFQQGL  120
CLKGDKCAFM HAPNFFFNKP LQPPVSTASS ESPTVKKAFG GVEKSQQGKN LSQTKNLKPH  180
ELPKPVGKLE NHLTKNDNAV DENALPPNSV INREHFRYKP TNMPHTNGNP FSGPKRVQQP  240
IGIDDHSSMQ NKDDEISREP SPGFDVLVDD ELRGSDYYHG EDQYGGTRSN GGGNEYEMGD  300
SADYDSVADI DQDMYRDVRG YDSYDGLQGH YAWEQHMASS ERIPGGSAHL ERSRYDNVDR  360
PEQVKTSDLR HKLSKHRRSN GLKSVISHDF ESEKHVEDQV NKSSRRDAPR YLPPHDSSLS  420
GRLRGRIKLP VWSSSPTDRA ESRLDRGMDR VRDRGRLSSE RPQVSSYQGR LQERIKGRVQ  480
EDLNNGGRNN RGPPLRRDIN DNNSSFSGPK SLAEIKGRKT AESSEEKLNE QQPLGKRKFQ  540
KLDSKEDLSF EGPKPLQEIL KRKRGGGTDM ASGASEDQSA MTKNGSDHSI QKEESKLASG  600
DSNGPQETKV ADQQSPLHLN ANELEAEDEM IVEGADAQDH EGYDQGYGDD DYEPVEGEDY  660
NLDEGDEEYL DDDDDDFAKK LGVVSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623001.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLM1BCR90.0M1BCR9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000422530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633